Plant MITE

SE1220013

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11736
Citrullus lanatus
SE1220013
Mutator
M2
scaffold242:1522941-1523140
ATTAAATTA
A

Secondary structure and sequence

TSD TIR

5'

3'

      TTAGGGTTGTTTTCAAATATAGCAAAATGAACCAAACTATTTACAAATATATAAAAATTTCACTATCTATCTACGATAGACCGCGATAGACTTC
ATTAAA                                                                                              
||||||                                                                                               
ATTAAA                                                                                              
      TTACCTTTTAATAATATTTATCTTTTTTATAGTTTAATATTAAATGTTTATATCTTTTTAAAGTGACAGATAGTCGTTATCTGGTACTATCTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1220013

ATTAAATTAGGGTTGTTTTCAAATATAGCAAAATGAACCAAACTATTTACAAATATATAAAAATTTCACTATCTATCTACGATAGACCGCGATAGACTTCTATCTATCATGGTCTATTGCTGATAGACAGTGAAATTTTTCTATATTTGTAAATTATAATTTGATATTTTTTCTATTTATAATAATTTTCCATTAAATTA

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