SE1250016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11739
  • Citrullus lanatus
  • SE1250016
  • PIF/harbinger
  • To4
  • scaffold121:1610898-1611205
  • TAA
  • AGACCCCGTTTTGTAACCATTTCGTTTTTTATTTTTGGTTTTTAAAAATTAAACTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      C    T     C    C     TTA            A        A     TTCCT   A         --AA     GGCATA       AG   -----------------    GTTGAATCTTAGTCAAATTCCAAAAACAAAAACAAATCT
  AGACCC GTTT GTAAC ATTT GTTTT   TTTTTGGTTTTT AAAATTAA CTTAT     TAC TTTTCTTAC    GGGTT      TTTCTTG  TAC                 AAGA                                       
  |||||| |||| ||||| |||| |||||   |||||||||||| |||||||| |||||     ||| |||||||||    |||||      |||||||  |||                 ||||                                        
  TCTGGG TAAA CATTG TAAA TAAAA   AAAAATCAAAAA TTTTAATT GGATG     GTG GGGAGAGTG    TTTAA      AAAGAAT  ATG                 TTTT                                       
AA      A    C     T    C     CCC            C        C     --TTT   -         GGGA     ACAACG       AG   AAAAATGGACACAAAAT    TGTTCAGTTTAAAACTTTTGATGTTTTTTATCAAAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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