SE1250017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11740
  • Citrullus lanatus
  • SE1250017
  • PIF/harbinger
  • To5
  • scaffold28:4994896-4995332
  • TAA
  • TAAGGTTTAAATACTACTTTGGTCATTGTAATTTTAGTTTTTGCTCACTTTGGTCCCTCTACTTTCAAAATGTTCATTTTGGTCCCTATACTTT

Secondary structure and sequence

TSD    TIR
5'



3'
      T                 A     A    A     T C   C        CTC          A                -        CAAC                                              CA        C             A     A    AA   AAAAAAA      --AC      TA      AAAAGT
TAAGGT TAAATACTACTTTGGTC TTGTA TTTT GTTTT G TCA TTTGGTCC   TACTTTCAAA TGTTCATTTTGGTCCC TATACTTT    TTTGGTTCATTTTGGTCCCTATACTTTAAAAATGTTCATTTTGGTC  TGTATTTT AACTTTGGTTTAT TTGGT CTTG  CTT       AAAAAG    CATTTT  TCCTTT      
|||||| ||||||||||||||||| ||||| |||| ||||| | ||| ||||||||   |||||||||| |||||||||||||||| ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||| ||||| ||||  |||       ||||||    ||||||  ||||||      G
ATTCTA ATTTATGATGAAATCAG GATAT AAAA CAAAA C AGT AAACCAGG   ATGAAAGTTT ACAAGTAAAACCAGGG ATATGAAA    AAACCAAGTAAAACCAGGGATATGAAGTTTTTATAAGTAAAATTAG  ACATGAAG TTGAAACCAAGTA AATCA GAAT  GAA       TTTTTC    GTAAAA  AGGGAA      
      T                 G     G    C     C A   A        AAT          A                G        ACCA                                              TA        A             A     A    AG   -----AA      AACA      CC      GTAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End