SE1250019

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11742
  • Citrullus lanatus
  • SE1250019
  • PIF/harbinger
  • To6
  • scaffold162:1895788-1896048
  • TAA
  • AGGGGTTGCTTGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA        C     ---------T     TTATGTAATAGGTTTGGATTGTAATGTAATCCAAAACCCATGTTTGGATTGAGCGCTTTGGGCCTAATTTGTTGTATTAAGCTCATTTCGTTCCGGAAGTTTTT
  AGGGGTTG TTGGG          GCCTG                                                                                                        
  |||||||| |||||          |||||                                                                                                         
  TCCCTAAC AACCC          CATTA                                                                                                        
AA        A     TCCAATTTTA     GTCCTAATGATCCTTAATCTCTTCACAACCTTACGTACTCCATAACTCTTGTTTTACTTTTATCCTAGCACTTTGCATTTTTACCATCCTTTTTCCCAAACCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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