SE1220020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11743
  • Citrullus lanatus
  • SE1220020
  • Mutator
  • M1
  • scaffold209:864333-864532
  • ATGTTAATA
  • TGTTAATAGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
A        -   ---------------------------        AAATATACGAAAATAAACTAAAATATTTACAAATATAGCATAATTTCACTGTCTATCTGTTTCATG
 TGTTAATA GGG                           TTGTTTTC                                                                  
 |||||||| |||                           ||||||||                                                                  A
 ATAATTGT CCT                           TTTTATAA                                                                  
         A   TTTAATAAAATTTACTATTTCAACAAC        ATATTTATTATCGTTTTATAGTAGTAGATAGACACTATCTAACGCTATCTGATGATAGACACAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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