Plant MITE

SE1220025

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11748
Citrullus lanatus
SE1220025
Mutator
M2
scaffold106:1765783-1765947
TAAATTAAA
AGGGTTGTTT

Secondary structure and sequence

TSD TIR

5'

3'

TAAATTAA    TT    -TCAAATATAGC     GA                         A   CA          - AGTC
        AGGG  GTTT            AAAAT  GTCAAACTATTTATAAATATAGAAA TTT  TTGTCTATCG C    
        ||||  ||||            |||||  ||||||||||||||||||||||||| |||  |||||||||| |     
        TCCC  TAAA            TTTTA  TAGTTTGATAAATGTTTATATTTTT AAA  AACAGATAGT G    
AAATTAAA    TT    TAATATTTACTT     -A                         A   AC          T CTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1220025

TAAATTAAAGGGTTGTTTTCAAATATAGCAAAATGAGTCAAACTATTTATAAATATAGAAAATTTCATTGTCTATCGCAGTCTATCGTTGATAGACAACAAAAATTTTTATATTTGTAAATAGTTTGATAATTTTTTCATTTATAATAAATTTCCCTAAATTAAA

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