SE1220031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11754
  • Citrullus lanatus
  • SE1220031
  • Mutator
  • M1
  • scaffold260:2323109-2323331
  • CTTTTTTAA
  • TTTTTAAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CT   TT     AAATTATC        --     C  -CTA             CTA          -A  AA              A                ---      TAT
  TTT  AAAGG        TTAAATGT  CAAAA TG    AAAATATTTACAA   ATAGCAAAAT  CA  GTCTATCTGCGATA ATCGCGATAGACTATT   TGTGTT   
  |||  |||||        ||||||||  ||||| ||    |||||||||||||   ||||||||||  ||  |||||||||||||| ||||||||||||||||   ||||||    
  AAA  TTTCC        AGTTTATA  GTTTT AC    TTTTATAAATGTT   TATCGTTTTA  GT  TAGATAGACGTTAT TAGCGCTATCTGATAA   ATACAG   
     TT     CCGAGAAA        TC     -  TTAG             -TA          AA  GA              C                TAG      TGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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