SE1220033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11756
  • Citrullus lanatus
  • SE1220033
  • Mutator
  • M2
  • scaffold364:652423-652667
  • TAAACTAAA
  • AGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAACTAA   AAAATTA   T           -ATATC   T  T                              C       AACC         - GC       --      --A    TA
        AGG       TTA AAATAGAAAAA      AAA TA TTACAAATATAGCAAAATTTTATTTTCTAT TGTGATA    GTGATAAAC C  GATAGAC  CTATCA   TGTC  
        |||       ||| |||||||||||      ||| || |||||||||||||||||||||||||||||| |||||||    ||||||||| |  |||||||  ||||||   ||||  T
        TCC       AGT TTTATCTTTTT      TTT AT AATGTTTATATCGTTTTAAAATGAAAGATA ACACTAT    CACTATTTG G  CTATTTG  GATAGT   ATGG  
AAATCAAA   CTACAAA   T           ACCAAC   T  T                              A       CCAA         T GT       TA      AAA    TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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