SE1220037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11760
  • Citrullus lanatus
  • SE1220037
  • Mutator
  • M2
  • scaffold22:2284369-2284536
  • TTAATTAAT
  • TTAATTAATGAGTTGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
         --T        TTCAAAT    C      AGCC                                  -------       A
 TTAATTAA   GAGTTGTT       ATAG AAAATG    AAATTATTTACAAATATAGAAAAGTTTCACTATT       GTTTATC 
 ||||||||   ||||||||       |||| ||||||    ||||||||||||||||||||||||||||||||||       ||||||| G
 AATTAATT   TTTAATAA       TATC TTTTAT    TTTAATAAATGTTTATATCTTTTTAAAGTGATAG       CAGATAG 
T        CCC        ---TATT    T      --AA                                  TTAACGT       C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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