SE1220043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11766
  • Citrullus lanatus
  • SE1220043
  • Mutator
  • M2
  • scaffold16:740186-740400
  • TAACAAAAA
  • AGGGATGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TAACAAAA     T   --TTCAA                   AA  A                              ATA        C          -      AT
         AGGGA GTT       AAATAGAAAAAATGTTGAA  TA TTGCAAATATAGCAAAATTTTACTTTTTAT   TGATAGAC GCGATAGACC AGATAG  
         ||||| |||       |||||||||||||||||||  || ||||||||||||||||||||||||||||||   |||||||| |||||||||| ||||||   
         TCTTT TAA       TTTATCTTTTTTATAGTTT  AT AATGTTTATATCGTTTTAAAATGAAAGATA   ACTATCTG CGCTATCTGG TCTATC  
AAAAAACAA     T   TTTAATA                   -G  A                              GAC        T          G      TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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