Plant MITE

SE1220056

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11779
Citrullus lanatus
SE1220056
Mutator
M12
scaffold226:579575-579772
TTATTACAT
GAGTGATACTTGGGTGCA

Secondary structure and sequence

TSD TIR

5'

3'

TTATTACAT   T        G     TGACCCA    TATGCTTC  CT   -GT   -  A       --AAATA          TTTAAAAAA     AAA
         GAG GATACTTG GTGCA       TCTC        CC  TCT   TGC TC CACCAAA       ATTAAAATAT         TAAAT   
         ||| |||||||| |||||       ||||        ||  |||   ||| || |||||||       ||||||||||         |||||   A
         CTT TTATGAAT CACGT       AGAG        GG  AGA   ACG AG GTGGTTT       TAATTTTATA         GTTTG   
CACATTATT   T        A     -------    TTCTTCAT  AT   AAC   T  G       AATAGGA          CTGTACACC     ATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1220056

TTATTACATGAGTGATACTTGGGTGCATGACCCATCTCTATGCTTCCCCTTCTGTTGCTCACACCAAAAAATAATTAAAATATTTTAAAAAATAAATAAAAATAGTTTGCCACATGTCATATTTTAATAGGATAATTTGGTGGGATGCACAAAGATAGGTACTTCTTGAGATGCACATAAGTATTTTTCTTATTACAC

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