Plant MITE

SE1230058

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11781
Citrullus lanatus
SE1230058
hAT
Hat4
scaffold300:756154-756809
GTCATTGG
CATTGGTAGGAGTG

Secondary structure and sequence

TSD TIR

5'

3'

GT  T   -        ATAGTC    C       TCGGTTTTAGAGCCAACCAAGAACCAAAACAAACTAATCTGTCTTACAAAGAAGAAATCCAAACCAATGTCCAATAAAGAATAAAACCAATGGATTGGTTTTATTTGGATCAGTTTATTATCGGTTTGCTTCTCGATTTTTGGCATTTTCTCCTTTTCTTCCAATTTTTTTTTAAAATTTTATTTCCACTTTGTTTTGAATCAGTCATTTTTTTTCTAATTTTAAATTAAAATGGGGTCTATTTCTTTTTTGTATAAATTGAAATTTGAAATTTGACATTTTTGTTTTTTTCTTG
  CA TGG TAGGAGTG      GGTT GGTTTTG                                                                                                                                                                                                                                                                                                       
  || ||| ||||||||      |||| |||||||                                                                                                                                                                                                                                                                                                        
  GT ACT ATCCTCAC      TTTT TGGTTTT                                                                                                                                                                                                                                                                                                       
 G  T   G        -GTTGT    -       TAAACTTTTAGGTTTGGTTAGGTTACTATACCAAACCAAAAAATCATACTTTAACCTGTATAACCAAACATAAACCTCTTTTGGTTGTTCATAACCAAGCCTAACCAAAAAATAATCTTTTTAGTTAGTTTTGGCTTGGCTTGGTTACTATATATATATATATATAAAGGAACTTTTATTTGAGAAGTAATCTGTAAAAGTCATAAGATTAATAATACTACGTACATATAAACTACAAATCTATTTTATAGTTAATAATACCTCGCACATATAAAAAAAAATAAATCTTTTCACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1230058

GTCATTGGTAGGAGTGATAGTCGGTTCGGTTTTGTCGGTTTTAGAGCCAACCAAGAACCAAAACAAACTAATCTGTCTTACAAAGAAGAAATCCAAACCAATGTCCAATAAAGAATAAAACCAATGGATTGGTTTTATTTGGATCAGTTTATTATCGGTTTGCTTCTCGATTTTTGGCATTTTCTCCTTTTCTTCCAATTTTTTTTTAAAATTTTATTTCCACTTTGTTTTGAATCAGTCATTTTTTTTCTAATTTTAAATTAAAATGGGGTCTATTTCTTTTTTGTATAAATTGAAATTTGAAATTTGACATTTTTGTTTTTTTCTTGCCACTTTTCTAAATAAAAAAAAATATACACGCTCCATAATAATTGATATTTTATCTAAACATCAAATATACATGCATCATAATAATTAGAATACTGAAAATGTCTAATGAAGAGTTTATTTTCAAGGAAATATATATATATATATATCATTGGTTCGGTTCGGTTTTGATTGATTTTTCTAATAAAAAACCAATCCGAACCAATACTTGTTGGTTTTCTCCAAATACAAACCAATATGTCCAATTTCATACTAAAAAACCAAACCATATCATTGGATTGGTTTGGATTTTCAAATTTTTGGTTTTTTGTTGCACTCCTAGTCATTGG

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