SE1220060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11783
  • Citrullus lanatus
  • SE1220060
  • Mutator
  • M2
  • scaffold180:1214557-1214710
  • TAAAATTTA
  • TAAAATTTAGAGAAATTATTATAAATAAAAAAATATCAAACTATTTATAAATATAGAAAAATTC

Secondary structure and sequence

TSD    TIR
5'



3' 
    A     A  AA  A   TAA   AA     --A                         -A   --TATA   TAT
TAAA TTTAG GA  TT TTA   ATA  AAAAT   TCAAACTATTTATAAATATAGAAAA  TTC      GTC   
|||| ||||| ||  || |||   |||  |||||   |||||||||||||||||||||||||  |||      |||   C
ATTT AAATC CT  AA AGT   TAT  TTTTA   AGTTTGATAAATGTTTATATCTTTT  AAG      TAG   
    A     C  AA  A   TTA   CG     CTC                         AA   TAACCA   TCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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