SE1220061

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11784
  • Citrullus lanatus
  • SE1220061
  • Mutator
  • M13
  • scaffold116:1474257-1474540
  • TTATTATTA
  • AGGATAAATTGCAAATTTAGTTCTTCTAATTTAGAAAAAGTTAGAGTTTAGTCTATTTGATTTTAAAATTAGAATTTAGTTTTTATAATTTGATAAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TTATTATT   A              A   CT    --A   A                     ATT          -A   G     A         A    - T      CTCATAAAT        A   ACA  CT  ATTT
        AGG TAAATTGCAAATTT GTT  TCTA   TTT GAAAAAGTTAGAGTTTAGTCT   TGATTTTAAA  TTA AATTT GTTTTTATA TTTG A AAAATT         AGTTCCTA GGT   GA  AA    
        ||| |||||||||||||| |||  ||||   ||| |||||||||||||||||||||   ||||||||||  ||| ||||| ||||||||| |||| | ||||||         |||||||| |||   ||  ||     
        TTC ATTTAATGTTTAAA CAG  AGAT   GAA TTTTTTTAATCTTAGATCAGA   ACTAAAATTT  AAT TTAAA CAGGGATAT AAAC T TTTTAA         TCAGGGAT CTA   CT  TT    
ATTATTAT   A              C   --    ACC   C                     GAT          AC   A     C         C    C C      --TCTTAAC        A   AAC  TT  CAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End