SE1230066

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11789
  • Citrullus lanatus
  • SE1230066
  • hAT
  • Hat5
  • scaffold209:1345525-1346059
  • GAAATAGG
  • TAGGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GAAATAGG      CGTACAC         TGGGTTAAGGGTATTTTTTGAACCAACTCGAAAATTCGGGTTGGTCAGGTTGGCTACCCAACTAACCCGAACAGGGTACACAACCCAACCCAACCCAACCCTGGGTTGGGTTGGGTTGGATTGTCGGGTTGTGTGTGTTTTTTTTTTCTTTTCTTTTCCCCCTATTTTTTGGTAAAACACATTGGCATATCAATAAACACTAATTGACATATCAATTGATCCAAGATAAAGTATAAAATA
        TAGGGG       GGGTTGGGT                                                                                                                                                                                                                                                
        ||||||       |||||||||                                                                                                                                                                                                                                                C
        ATCCCC       CAAGTTTAC                                                                                                                                                                                                                                                
GGATAAAG      ------A         TGGGCTGTTGGGCTTGTTGGGTCTGATGGATTGGGTTTATTATTCCCAATCCAACCCAATCAAATTTTAAACCCAACCCGACCCAATTAAAAAAAAACATAAAAAGCCCAACCCAACCCAGAGCCCAACGTTAAAACTTTTAAGCCCAGCTGGGTTGGGTTGGGTTGGGCTTAAAGATTATAATTATAATTTCAAATTCAATCACAATTCTTGATAAAATATAAAAAAAGAATCTAGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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