SE1230068

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11791
  • Citrullus lanatus
  • SE1230068
  • hAT
  • Hat5
  • scaffold3:4613288-4613864
  • TGTAGTTT
  • TAGGGGTGTACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TGTAGTTT         A  ----C     GGGTTGGGTTAGGAGTATTTTTTGGACCAACCCGAAAATTCAGGTTGATCAGGTTGGCTACCCGAATAGGGTACCCAACCCAACCCAACCCAATCCTTAACATTTGGGTTGGGTTGGATTGTCGGGTTGTGTGTGTGTGTTTTTTTTCTTTTCTTTTCCCCCTATTTTTTGGTAAAACACATTGGCATATCAATAAACACTAATTGACATATCAATTGATCCAAGATAAAGTATAAAATACATTGATCTAAGAAAAAAAT
        TAGGGGTGT CA     GGGTT                                                                                                                                                                                                                                                                    
        ||||||||| ||     |||||                                                                                                                                                                                                                                                                    A
        ATCCCCACA GT     GGGCT                                                                                                                                                                                                                                                                    
TTTGATGT         A  TTACT     GTTGAGCTTGTTGGGCCTGATGGGTTGGGCTTATTATTCCCAATCCAACCCAATCAAATTGTAAACCCAACCCCACCCAATTAAAAAAAAACATAAAAAGCCCAACCCAACCCAGAGCTCAACGTTAAAACTTTTAAGTCCAATTGGGTTGGGTTGGGCTTAAAAGATTATAATTATAATATATTATATTTATATATATATATATATATATATATATATATATATATATAATCAAATTCAATCATAATTCTTGATAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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