Plant MITE

SE1220069

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11792
Citrullus lanatus
SE1220069
Mutator
M5
scaffold84:324530-324869
TTGTTTTTT
GGGCAAATTGCAAAAACCACCCCTAAAGTGTGATGATAGTTGCAATTATACCCTTAAACTTTCAA

Secondary structure and sequence

TSD TIR

5'

3'

TTGTTTTTT                      C         A  A              C              -ATTTAA     A     C  C   ATCCAAA       T   AAA    -         TAACTATATAAA      T     ----       -T       T
         GGGCAAATTGCAAAAACCACCC TAAAGTGTG TG TAGTTGCAATTATA CCTTAAACTTTCAA       AATTG GCCCT AA CTT       TGTTAAA TTG   CCTC AAACTTACA            TTGTAA AATTG    TATAAGT  TGAGGGT 
         |||||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||       ||||| ||||| || |||       ||||||| |||   |||| |||||||||            |||||| |||||    |||||||  ||||||| C
         CCCGTTTAACGTTTTTGGTGGG ATTTCATAT AC ATCAACGTTAATAT GGAATTTGAAAGTT       TTAAC CGGGG TT GAA       ACAATTT AAC   GGGG TTTGAATGT            AACGTT TTAAC    GTGTTCA  ATTTTTA 
TTTTTTGTT                      C         C  C              A              ATCATTG     -     A  T   GATTTTC       T   -CC    A         ----------TA      T     TTAG       CT       A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1220069

TTGTTTTTTGGGCAAATTGCAAAAACCACCCCTAAAGTGTGATGATAGTTGCAATTATACCCTTAAACTTTCAAATTTAAAATTGAGCCCTCAACCTTATCCAAATGTTAAATTTGAAACCTCAAACTTACATAACTATATAAATTGTAATAATTGTATAAGTTTGAGGGTTCAATTTTTATCACTTGTGGATTCAATTTTTGCAAATTGTAAGTTTAGGGGCCCAATTTTAACACTTTTAGAAGTTTAGGGGCCAATTGTTACTATTGAAAGTTTAAGGATATAATTGCAACTACCACTATACTTTACGGGTGGTTTTTGCAATTTGCCCTTGTTTTTT

Copy Cancel