SE1220073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11796
  • Citrullus lanatus
  • SE1220073
  • Mutator
  • M5
  • scaffold349:3848833-3849140
  • TATATTTTA
  • TAGGGCAAATTACAAAAACAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATATTT           A      CA   ATATAATG  AGTTGCAATTATACCCTTAAGCTTTTAAATTTAAAAATTGAGTCATCACCCTTATCTAAATGTTAAAATTGAACCTTCAAACTTACTGATTGTATAAATTGTAATAATTGTATAAGCT
       TAGGGCAAATT CAAAAA  ACC        GT                                                                                                                      
       ||||||||||| ||||||  |||        ||                                                                                                                       
       ATCTCGTTTAA GTTTTT  TGG        GG                                                                                                                      
ATTTTAT           C      TA   --------  ATTTCATACCAACATCAATGTTAATATAGGAATTTGAAAGTTATCATTATTAACTCGGCAGTTTAAATGTTATTGATATTTTTAACTTGGGTGTTTACTATTTTTTTAACTTGGGAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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