SE1250076

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11799
  • Citrullus lanatus
  • SE1250076
  • PIF/harbinger
  • To4
  • scaffold300:823668-823972
  • TAA
  • AGTCCCCGTTTGGTAACCATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  T        G           ----TTAAAAAAAAAAA   -         C   CTTCCTCCCTATTTCTT      A         CTTTTAA    AATAGTTGAATTCTTTGCCAAATTCAAAAAACAAAATCAAGTTTTTAAAAGCTATTTTTTTT
  AG CCCCGTTT GTAACCATTTT                 TTT AAAATTAAG CTA                 ACATTG TTTGCATCT       CAAC                                                              
  || |||||||| |||||||||||                 ||| ||||||||| |||                 |||||| |||||||||       ||||                                                              A
  TC GGGGCAAG CATTGGTAAAG                 AAA TTTTAATTC GAT                 TGTGAT AAACGTGGA       GTTT                                                              
AA  C        A           CAAAAAAATAAAAACAA   C         A   --------------ATC      -         ------A    AAGTAAGTAAACAATAGATGAAAATTGGTTACCAAATTTTTTAGTTCGGTTTTAAACTTTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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