Plant MITE

SE1250077

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11800
Citrullus lanatus
SE1250077
PIF/harbinger
To4
scaffold36:476168-476477
TAA
AGGCCCCGTTTGGTAACCATTTTGTTTTTGGTTTTCGGTTTTTGAAAATTAAGCCTATTTCCTCT

Secondary structure and sequence

TSD TIR

5'

3'

TA            GTA       T      G     CG      -G          ---------C       T  C      TTACCATGAGTTGCATCTTTCTTAAGTACAATACTTGAATTCTTAGCCAAATTCTAAAAACAAAATCAAGCTTTTA
  AGGCCCCGTTTG   ACCATTT GTTTTT GTTTT  GTTTTT  AAAATTAAGC          TATTTCC CT CAATTC                                                                            
  ||||||||||||   ||||||| |||||| |||||  ||||||  ||||||||||          ||||||| || ||||||                                                                            A
  TCCGGGGTAAAC   TGGTAAA TAAAAA CGAAA  CAAAAA  TTTTAATTCG          ATGAAGG GG TGTTTA                                                                            
AA            AAA       C      A     -A      AA          AATTTCTGTA       T  A      AAGAAGTAAATAATAGATGAAAAATGGTTACCAAATTTTTTAGTTCAGTTTAAAACCTTTGATTTTTTTCATCGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1250077

TAAGGCCCCGTTTGGTAACCATTTTGTTTTTGGTTTTCGGTTTTTGAAAATTAAGCCTATTTCCTCTCCAATTCTTACCATGAGTTGCATCTTTCTTAAGTACAATACTTGAATTCTTAGCCAAATTCTAAAAACAAAATCAAGCTTTTAAAAGCTACTTTTTTTAGTTTCCAAAATTTGACTTGATTTTTTAAACCATTGGTAAAAAGTAGATAATAAATGAAGAAATTTGTAGGTGGAAGTAATGTCTTTAAGCTTAATTTTAAAAAAACAAAAGCAAAAAATCAAATGGTAAACAAATGGGGCCTAA

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