SE1250080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11803
  • Citrullus lanatus
  • SE1250080
  • PIF/harbinger
  • To8
  • scaffold106:2974921-2975180
  • TAA
  • AGGGGGTGTTTGGGGGACCGTAATAGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     G        -----   C            -   TTGTAATGTAATGTAATCTAAAATCAATATTTAGATTGAGCATTTTGAGCTCGATTTGTAATACAAAACTCATTCCGTTCCGACAATTTTCA
  AGGGG TGTTTGGG     GGA CGTAATAGAATG AGA                                                                                            
  ||||| ||||||||     ||| |||||||||||| |||                                                                                             
  TCCCC ACAAACCT     CCT GCATTATCTTAG GAC                                                                                            
AA     G        CTCAA   T            T   CCTTAGTCTCCTCATAACTTTACGTACTCCTTAGCTCCTGCTTTGCTTTTACTCTAACACTTCGTACTTTCACCACTCTTTATTCCAACCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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