Plant MITE

SE1220087

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11810
Citrullus lanatus
SE1220087
Mutator
M5
scaffold31:4801680-4802034
TACTTCTTC
GGCAAATTGCAAAAACCACCCCTAAAGAATAATGGTAGTTGCAATTATACCTTTAAACTTTCAATTTTAAAAATTGAGCCCTCAAACTT

Secondary structure and sequence

TSD TIR

5'

3'

TACTTCTTCA   A         AA            A  AA                  C               T         A     C      AAAT            TAGGTCAAAT           AA      -        T      TAACATT G       -T       T
          GGC AATTGCAAA  CCACCCCTAAAG AT  TGGTAGTTGCAATTATAC TTTAAACTTTCAATT TAAAAATTG GCCCT AAACTT    GAGTGTTAAAAT          TGGATCTTCAA  CTTACA TAATTGTA AAATTG       T CATAAGT  TGAGGGT 
          ||| |||||||||  |||||||||||| ||  |||||||||||||||||| ||||||||||||||| ||||||||| ||||| ||||||    ||||||||||||          |||||||||||  |||||| |||||||| ||||||       | |||||||  ||||||| C
          CCG TTAACGTTT  GGTGGGGATTTC TA  ACCATCAACGTTAATGTG GAGTTTGAAAGTTAA ATTTTTAAC CGGGG TTTGAA    TTCACAATTTTA          ACCTGGGAGTT  GAGTGT ATTAACAT TTTAAT       G GTGTTCA  ATTTTTA 
CTTCTTCATC   C         TG            A  CC                  A               C         C     A      GGTT            ----------           -C      T        C      -----CT G       CT       A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1220087

TACTTCTTCAGGCAAATTGCAAAAACCACCCCTAAAGAATAATGGTAGTTGCAATTATACCTTTAAACTTTCAATTTTAAAAATTGAGCCCTCAAACTTAAATGAGTGTTAAAATTAGGTCAAATTGGATCTTCAAAACTTACATAATTGTATAAATTGTAACATTTGCATAAGTTTGAGGGTTCAATTTTTATCACTTGTGGGTCTAATTTCTACAATTATTGTGAGCTTGAGGGTCCAATTTTAACACTTTTGGAAGTTTAGGGGCCCAATTTTTACAATTGAAAGTTTGAGAGTGTAATTGCAACTACCACCATACTTTAGGGGTGGGTTTTGCAATTCGCCCTACTTCTTC

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