Plant MITE

SE1250097

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11820
Citrullus lanatus
SE1250097
PIF/harbinger
To4
scaffold7:2483966-2484272
TAA
AGGCCTCGTTAGGTAATCATTTCGTTTTTTATTTTTTATTTTGAAAATTAAGC

Secondary structure and sequence

TSD TIR

5'

3'

TA          AG          C       A     -TA        A      ATATTTTCTCCC    TTTTACAATGATTTGCATCTCTCTTACGTACAATAGTTGAATTCTTTGCCAAATTTCAAAAACAAAAGCAAGTTCTTAAAAGC
  AGGCCTCGTT  GTAATCATTT GTTTTTT TTTTT   TTTTGAAA TTAAGC            CATT                                                                                   
  ||||||||||  |||||||||| ||||||| |||||   |||||||| ||||||            ||||                                                                                    
  TCCGGGGTAG  CATTGGTAAG CAAAAAA AAAAA   AAAACTTT AATTCG            TGAA                                                                                   
AA          AA          T       C     CAA        -      -GATATCTGTAA    CGTGGAAGTTTAAATAAGGAAACAATAGATGAAAAATGGTTACCAAATTTTTTCGTTCGTTGTTAAACTTTTGATGTTTTTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1250097

TAAGGCCTCGTTAGGTAATCATTTCGTTTTTTATTTTTTATTTTGAAAATTAAGCATATTTTCTCCCCATTTTTTACAATGATTTGCATCTCTCTTACGTACAATAGTTGAATTCTTTGCCAAATTTCAAAAACAAAAGCAAGTTCTTAAAAGCTATTTTTGTAGTTTTCAAATTGTTGCTTGCTTTTTTAAACCATTGGTAAAAAGTAGATAACAAAGGAATAAATTTGAAGGTGCAAGTAATGTCTATAGGCTTAATTTCAAAAAACAAAAACAAAAAACTGAATGGTTACAAGATGGGGCCTAA

Copy Cancel