SE1220100

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11823
  • Citrullus lanatus
  • SE1220100
  • Mutator
  • M10
  • scaffold660:141772-142290
  • TAAAGAATT
  • GGGAAAATTACCTTTTTAGTCCCCAAGTTTTGGGTAATATGTGCATTTGTTCCCTGAGTTTTAAAAATGTACCTTTTTAGTCCCCAAGTTTATAAGAATATGTCCATTTGGTCCCAAGTTTTCAAAATATACATTTTCAGTCCCTGAATTTTTAAAAATAGGTTTTAAAGGTCCCTTAAATATTTTTTTATTATTATTTTAAACAATTATATGATATTTAAAATTAGAAAAAAATTAGTTTTAGAGAC

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAGAATT                                           C     T                       T           A              T    A      -  CAA           A   A    C         A                                                                       A         AAA   TAG          GCA
         GGGAAAATTACCTTTTTAGTCCCCAAGTTTTGGGTAATATGTG ATTTG TCCCTGAGTTTTAAAAATGTACC TTTTAGTCCCC AGTTTATAAGAATA GTCC TTTGGT CC   GTTTTCAAAAT TAC TTTT AGTCCCTGA TTTTTAAAAATAGGTTTTAAAGGTCCCTTAAATATTTTTTTATTATTATTTTAAACAATTATATGATATTT AAATTAGAA   AAT   TTTTAGAGAC   
         ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |||||| ||   ||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||   ||||||||||    
         CCCTTTTAATGGAAAAATCAGGGGTTCAAAACTTGTTATATAT TAAAC AGGGATTCAAAATTTTTATATGG AAAATCAGGGG TCAAATATTCTTAT CAGG AAACCA GG   CAAAAGTTTTA ATG AAAA TCAGGGACT AAAAATTTTTATCCAAAATTTCCAGGGAATTTATAAAAAAATAATAATAAAATTTGTTAATATACTATAAA TTTAATCTT   TTA   AAAATTTTTG   
TTAAGAAAT                                           A     C                       C           C              C    C      A  ATA           C   G    A         C                                                                       A         --C   TTA          GTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End