SE1250101

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11824
  • Citrullus lanatus
  • SE1250101
  • PIF/harbinger
  • To4
  • scaffold2754:151385-151692
  • TAA
  • AGGCCCCGTTTGGTAACCATTTTATCTTTTGTTTTTATTTTTAAAAATTAAGCCTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     C G               ATC         T      A              ACACACTACTTCTA      A       -  TTTATT     AT    A  AATA    AAAAAACCAAGCCAAATTTTAAAAACTAAAAATAGTAGCTTTTAAA
  AGGCC C TTTGGTAACCATTTT   TTTTGTTTT ATTTTT AAAATTAAGCCTAT              TCTCCA ATTTCTT CC      GTTTA  TTTT TC    GTTT                                              
  ||||| | |||||||||||||||   ||||||||| |||||| ||||||||||||||              |||||| ||||||| ||      |||||  |||| ||    ||||                                              A
  TCCGG G AAACCATTGGTAAAG   AAAACAAAA TAAAAA TTTTAATTTGGATA              AGAGGT TAAAGAA GG      CAAAT  AGAA AG    AATT                                              
AA     A A               CAA         C      C              ------------AA      G       T  ---TAC     GT    -  ----    CATGTTACCAACTTAAGAATTAGTTTAAGGTTTTTGTTTTTATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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