SE1220103

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11826
  • Citrullus lanatus
  • SE1220103
  • Mutator
  • M5
  • scaffold31:4801680-4802034
  • GAAGAAGTA
  • GGGCGAATTGCAAAACCCACCCCTAAAGTATGGTGGTAGTTGCAATTACACTCTCAAACTTTCAATTGTAAAAATTGGGCCCCTAAACTT

Secondary structure and sequence

TSD    TIR
5'



3'
GAAGAAGTA               C            T                   C   CTC            G              C       CCAAA           ----------    C C     -  C   A        G     A ACCC   AG  -    AAA    AC
         GGGCGAATTGCAAAA CCACCCCTAAAG ATGGTGGTAGTTGCAATTA ACT   AAACTTTCAATT TAAAAATTGGGCCC TAAACTT     AGTGTTAAAAT          TGGA C TCAAG CT ACA TAATTGTA AAATT G    ACA  TG ATAA   TTGA  
         ||||||||||||||| |||||||||||| ||||||||||||||||||| |||   |||||||||||| |||||||||||||| |||||||     |||||||||||          |||| | ||||| || ||| |||||||| ||||| |    |||  || ||||   ||||   
         TCCGTTTAACGTTTT GGTGGGGATTTC TATTACCATCAACGTTAAT TGG   TTTGAAAGTTAA ATTTTTAACTCGGG GTTTGAA     TCACAATTTTA          ACCT G AGTTT GA TGT ATTAACAT TTTAA C    TGT  AC TATT   AACT  
ATGAAGAAG               T            T                   A   AAA            A              A       TTTAC           ATCCAGTTTA    A A     T  A   -        A     - --AT   AA  G    -CA    CC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End