SE1220105

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11828
  • Citrullus lanatus
  • SE1220105
  • Mutator
  • M9
  • scaffold659:1261159-1261551
  • AAAAACTAA
  • GGTTAAAATATCATTTTGATTCCTATACTTTCGAGTTTGTTCAATTTTAGTCCCTATACTTTCAAATGTCCAATTTTAGTCTTTGTATTTTCAATAAATCTTACATTTAGTTCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAACTAA                  A       A    CG                    C                                                 C           ACTACTT    ----  T     TT T ---  TTACTTTTTATTTTTTATTAACATTTTCACTATAAATTTTCAAAAAAT
         GGTTAAAATATCATTTTG TTCCTAT CTTT  AGTTTGTTCAATTTTAGTCC TATACTTTCAAATGTCCAATTTTAGTCTTTGTATTTTCAATAAATCTTA ATTTAGTTCCT       ATTT    AT GTGGA  T T   TA                                                
         |||||||||||||||||| ||||||| ||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||    || |||||  | |   ||                                                A
         CCAATTTTATGGTAAAAC AGGGATA GAAA  TTAAACAAGTTAAAATCAGG ATATGAAAGTTTACAGGTTAAAATCAGAAACATGAAAGTTATTTAGAAT TAAATCAGGGA       GTTT    TA AAATA  G C   AA                                                
AATCAAAAA                  C       C    TG                    A                                                 T           -------    CAAT  -     -- - TTT  CTAACGTATTAGTATTATTAAAATTACGTTTCTTTGTGTTATACATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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