Plant MITE

SE1250109

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11832
Citrullus lanatus
SE1250109
PIF/harbinger
To13
scaffold75:237879-238196
TAC
GGCTCCGTTTGGTAATCATTTCATTTTTAGTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TAC      -G       A      CA     A      ---ATA   ----  AAAATCAAGCTTATAGACACTATTTCCACCTTCAAATTTATTCATTTGTTGTTTAGTTTTTACCAATAGTTTAAAAAACCAAACCAAAATTTGAAAACTAAAAAAAGTA
   GGCTCC  TTTGGTA TCATTT  TTTTT GTTTTT      TTT    GA                                                                                                             
   ||||||  ||||||| ||||||  ||||| ||||||      |||    ||                                                                                                              
   CTGGGG  AAATCAT GGTAAA  AAAAA CAAAAA      ACC    AC                                                                                                             
CAT      GA       C      AC     A      CCAAAA   AAAA  TTTTAATTCAAATAAAGTAGGTGTAAAGAATGTTACTAAAGGTATAAAGAATTCATGTTACTAACTCAAGAATAGGTTTAAGGTTTTTATTATTGTTTGAAAATTTTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1250109

TACGGCTCCGTTTGGTAATCATTTCATTTTTAGTTTTTATATTTGAAAAATCAAGCTTATAGACACTATTTCCACCTTCAAATTTATTCATTTGTTGTTTAGTTTTTACCAATAGTTTAAAAAACCAAACCAAAATTTGAAAACTAAAAAAAGTAACTTTTAAAAGTTTGTTATTATTTTTGGAATTTGGATAAGAACTCAATCATTGTACTTAAGAAATATGGAAATCATTGTAAGAAATGTGGATGAAATAAACTTAATTTTCAAAAACCAAAAACCAAAAACAAAAAACAAAATGGCTACTAAAAGGGGGTCTAC

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