SE1220112

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11835
  • Citrullus lanatus
  • SE1220112
  • Mutator
  • M5
  • scaffold162:1986898-1987250
  • TAATAATAA
  • GGAAAATTGCAAAAACCACCCCTAAAGTATGGTGGTAGGTACAATTATACCCTTAAACTTTCAATTTTAAAAATTGAGCCCTCAAAATTACATAAGTGTTAAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TAATAATAAG  A                 C  A  GTA         GTA  A      C          C    T         A   C  A     -AC              TGGATCAAAT           A      -        T      -TA    -TTCT    CT  AAGG
          GG AAATTGCAAAAACCACC CT AA   TGGTGGTAG   CA TTATAC CTTAAACTTT AATT TAAAAATTG GCC TC AAATT   ATAAGTGTTAAAAT          TGGACCTTCGA CTTACA TAATTGTA GAATTG   ACAT     ATAA  TT    
          || ||||||||||||||||| || ||   |||||||||   || |||||| |||||||||| |||| ||||||||| ||| || |||||   ||||||||||||||          ||||||||||| |||||| |||||||| ||||||   ||||     ||||  ||     
          CC TTTAACGTTTTTGGTGG GA TT   ACCACCATC   GT AATGTG GAGTTTGAAA TTAA ATTTTTAAC CGG AG TTTGA   TGTTCATAATTTTA          ACCTGGGAGTT GAATGT ATTAACAT TTTAAC   TGTA     TATT  AA    
AATAATAATA  G                 C  C  AAC         AAC  C      A          A    C         C   -  A     AAA              ----------           C      T        C      CTG    TTTAC    TT  CTTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End