Capsella rubella

Capsella rubella, the pink shepherd's-purse, closely related to Arabidopsis thaliana in the Brassicaceae family, offers a valuable model for exploring the transition from self-incompatibility to self-compatibility in plant reproduction. Found primarily in the Mediterranean region, it diverged from its closest ancestor approximately 30,000 to 50,000 years ago, distinguishing itself from Capsella bursa-pastoris by its diploid genome.

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MITE ID MITE identifier Superfamily Family Chr Start End Select all
MITE_2966 SE0550001 PIF/harbinger To1 scaffold_8 6574358 6574781
MITE_2967 SE0520002 Mutator M1 scaffold_2 6940373 6940920
MITE_2968 SE0510003 Tc1/Mariner St1 scaffold_4 5331035 5331270
MITE_2969 SE0550004 PIF/harbinger To2 scaffold_1 13001381 13001858
MITE_2970 SE0550005 PIF/harbinger To3 scaffold_3 6464036 6464408
MITE_2971 SE0550006 PIF/harbinger To3 scaffold_8 11028580 11028942
MITE_2972 SE0530007 hAT Hat1 scaffold_4 2077460 2078068
MITE_2973 SE0550008 PIF/harbinger To4 scaffold_5 11403343 11403509
MITE_2974 SE0520009 Mutator M2 scaffold_5 4030981 4031423
MITE_2975 SE0530010 hAT Hat2 scaffold_4 7471503 7472260
MITE_2976 SE0550011 PIF/harbinger To5 scaffold_8 11199436 11199635
MITE_2977 SE0510012 Tc1/Mariner St2 scaffold_4 3042476 3042728
MITE_2978 SE0550013 PIF/harbinger To6 scaffold_7 7083342 7083459
MITE_2979 SE0510014 Tc1/Mariner St3 scaffold_2 4444856 4445105
MITE_2980 SE0550015 PIF/harbinger To7 scaffold_1 4842285 4842492
MITE_2981 SE0530016 hAT Hat3 scaffold_6 1982305 1982517
MITE_2982 SE0550017 PIF/harbinger To8 scaffold_5 8725399 8725537
MITE_2983 SE0520018 Mutator M3 scaffold_2 8967103 8967615
MITE_2984 SE0550019 PIF/harbinger To9 scaffold_7 45589 45706
MITE_2985 SE0550020 PIF/harbinger To10 scaffold_5 2906899 2907037
MITE_2986 SE0550021 PIF/harbinger To11 scaffold_6 16376312 16376429
MITE_2987 SE0520022 Mutator M4 scaffold_4 12387317 12387863
MITE_2988 SE0520023 Mutator M5 scaffold_1 12145964 12146519
MITE_2989 SE0550024 PIF/harbinger To12 scaffold_5 9263674 9263811
MITE_2990 SE0550025 PIF/harbinger To13 scaffold_2 2700660 2700857
MITE_2991 SE0530026 hAT Hat4 scaffold_8 12567200 12567412
MITE_2992 SE0540027 CACTA Ca1 scaffold_8 5926723 5926908
MITE_2993 SE0520028 Mutator M6 scaffold_7 10752056 10752323
MITE_2994 SE0550029 PIF/harbinger To9 scaffold_3 8748506 8748622
MITE_2995 SE0550030 PIF/harbinger To14 scaffold_3 11780968 11781221
MITE_2996 SE0550031 PIF/harbinger To15 scaffold_135 3931 4291
MITE_2997 SE0550032 PIF/harbinger To2 scaffold_4 10619145 10619621
MITE_2998 SE0520033 Mutator M7 scaffold_7 9195696 9196368
MITE_2999 SE0530034 hAT Hat4 scaffold_8 12567200 12567412
MITE_3000 SE0530035 hAT Hat5 scaffold_8 8559252 8559474
MITE_3001 SE0550036 PIF/harbinger To16 scaffold_1 9754254 9754621
MITE_3002 SE0520037 Mutator M8 scaffold_2 7604132 7604762
MITE_3003 SE0550038 PIF/harbinger To17 scaffold_8 4275235 4275587
MITE_3004 SE0510039 Tc1/Mariner St3 scaffold_6 12724111 12724354
MITE_3005 SE0550040 PIF/harbinger To18 scaffold_2 3502485 3502624
MITE_3006 SE0550041 PIF/harbinger To19 scaffold_2 2045040 2045294
MITE_3007 SE0550042 PIF/harbinger To5 scaffold_3 935677 935876
MITE_3008 SE0530043 hAT Hat6 scaffold_6 9566987 9567544
MITE_3009 SE0550044 PIF/harbinger To4 scaffold_3 5049248 5049414
MITE_3010 SE0550045 PIF/harbinger To15 scaffold_4 12377065 12377425
MITE_3011 SE0550046 PIF/harbinger To2 scaffold_4 10619145 10619621
MITE_3012 SE0550047 PIF/harbinger To7 scaffold_1 4842285 4842492
MITE_3013 SE0550048 PIF/harbinger To8 scaffold_1 11827486 11827623
MITE_3014 SE0550049 PIF/harbinger To20 scaffold_3 5986171 5986391
MITE_3015 SE0550050 PIF/harbinger To10 scaffold_5 12072985 12073123
MITE_3016 SE0550051 PIF/harbinger To18 scaffold_7 9520557 9520696
MITE_3017 SE0530052 hAT Hat7 scaffold_2 10181419 10182144
MITE_3018 SE0530053 hAT Hat8 scaffold_4 7907026 7907730
MITE_3019 SE0550054 PIF/harbinger To17 scaffold_4 2679286 2679636
MITE_3020 SE0530055 hAT Hat2 scaffold_6 15772261 15773053
MITE_3021 SE0520056 Mutator M5 scaffold_3 10985670 10986224
MITE_3022 SE0520057 Mutator M9 scaffold_3 10939914 10940484
MITE_3023 SE0550058 PIF/harbinger To21 scaffold_7 13978459 13979182
MITE_3024 SE0530059 hAT Hat9 scaffold_7 16866915 16867128
MITE_3025 SE0550060 PIF/harbinger To12 scaffold_2 11559975 11560112
MITE_3026 SE0550061 PIF/harbinger To5 scaffold_1 16255748 16255947
MITE_3027 SE0550062 PIF/harbinger To22 scaffold_6 14888032 14888581
MITE_3028 SE0550063 PIF/harbinger To13 scaffold_2 6854700 6854866
MITE_3029 SE0550064 PIF/harbinger To23 scaffold_7 4557181 4557915
MITE_3030 SE0530065 hAT Hat10 scaffold_2 2002166 2002836
MITE_3031 SE0520066 Mutator M9 scaffold_2 4823942 4824502
MITE_3032 SE0550067 PIF/harbinger To13 scaffold_7 514212 514388
MITE_3033 SE0550068 PIF/harbinger To24 scaffold_2 12865116 12865453
MITE_3034 SE0550069 PIF/harbinger To25 scaffold_2 12582840 12583250
MITE_3035 SE0530070 hAT Hat11 scaffold_2 13537090 13537282
MITE_3036 SE0550071 PIF/harbinger To27 scaffold_6 6981198 6981397
MITE_3037 SE0530072 hAT Hat3 scaffold_4 1705489 1705702
MITE_3038 SE0520073 Mutator M8 scaffold_1 13678197 13678828
MITE_3039 SE0540074 CACTA Ca1 scaffold_1 15238577 15238751
MITE_3040 SE0520075 Mutator M4 scaffold_4 265639 266186
MITE_3041 SE0520076 Mutator M8 scaffold_7 6274476 6275104
MITE_3042 SE0550077 PIF/harbinger To3 scaffold_4 4585905 4586266
MITE_3043 SE0530078 hAT Hat3 scaffold_3 12020055 12020268
MITE_3044 SE0520079 Mutator M2 scaffold_5 4303487 4303931
MITE_3045 SE0520080 Mutator M3 scaffold_6 10409761 10410276
MITE_3046 SE0510081 Tc1/Mariner St2 scaffold_4 3042476 3042728
MITE_3047 SE0550082 PIF/harbinger To3 scaffold_6 11516308 11516680
MITE_3048 SE0520083 Mutator M6 scaffold_7 10752056 10752324
MITE_3049 SE0550084 PIF/harbinger To10 scaffold_5 2906899 2907037
MITE_3050 SE0510085 Tc1/Mariner St2 scaffold_3 10147660 10147913
MITE_3051 SE0510086 Tc1/Mariner St2 scaffold_8 5626099 5626349
MITE_3052 SE0530087 hAT Hat4 scaffold_3 12657951 12658164
MITE_3053 SE0510088 Tc1/Mariner St2 scaffold_4 3055425 3055677
MITE_3054 SE0550089 PIF/harbinger To1 scaffold_7 11224576 11224999
MITE_3055 SE0550090 PIF/harbinger To28 scaffold_4 6275245 6275977
MITE_3056 SE0550091 PIF/harbinger To1 scaffold_7 12205192 12205615
MITE_3057 SE0550092 PIF/harbinger To29 scaffold_1 17067746 17068094
MITE_3058 SE0550093 PIF/harbinger To7 scaffold_4 959648 959857
MITE_3059 SE0520094 Mutator M10 scaffold_1 12039311 12039683
MITE_3060 SE0550095 PIF/harbinger To8 scaffold_5 8725399 8725537
MITE_3061 SE0550096 PIF/harbinger To4 scaffold_5 11403343 11403509
MITE_3062 SE0550097 PIF/harbinger To12 scaffold_2 11559975 11560112
MITE_3063 SE0550098 PIF/harbinger To10 scaffold_5 12072985 12073123
MITE_3064 SE0530099 hAT Hat1 scaffold_14 92210 92824
MITE_3065 SE0550100 PIF/harbinger To30 scaffold_7 1117850 1118069
MITE_3066 SE0520101 Mutator M1 scaffold_6 14147556 14148102
MITE_3067 SE0520102 Mutator M9 scaffold_3 10939914 10940484
MITE_3068 SE0520103 Mutator M6 scaffold_7 10752056 10752324
MITE_3069 SE0550104 PIF/harbinger To14 scaffold_3 11780968 11781221
MITE_3070 SE0530105 hAT Hat9 scaffold_5 3056814 3057026
MITE_3071 SE0550106 PIF/harbinger To10 scaffold_5 12072985 12073123
MITE_3072 SE0550107 PIF/harbinger To4 scaffold_3 5049248 5049478
MITE_3073 SE0550108 PIF/harbinger To16 scaffold_1 9754254 9754621
MITE_3074 SE0550109 PIF/harbinger To31 scaffold_5 9971774 9972062
MITE_3075 SE0540110 CACTA Ca1 scaffold_2 3912971 3913145
MITE_3076 SE0520111 Mutator M10 scaffold_8 1624929 1625303
MITE_3077 SE0550112 PIF/harbinger To3 scaffold_5 2170855 2171217
MITE_3078 SE0550113 PIF/harbinger To8 scaffold_5 8725399 8725537
MITE_3079 SE0530114 hAT Hat12 scaffold_7 10338379 10339076
MITE_3080 SE0550115 PIF/harbinger To32 scaffold_8 1784210 1784375
MITE_3081 SE0550116 PIF/harbinger To33 scaffold_7 12249434 12249777
MITE_3082 SE0550117 PIF/harbinger To34 scaffold_5 239537 239674
MITE_3083 SE0550118 PIF/harbinger To18 scaffold_8 12414247 12414386
MITE_3084 SE0550119 PIF/harbinger To35 scaffold_227 2171 2493
MITE_3085 SE0510120 Tc1/Mariner St3 scaffold_8 3408647 3408896
MITE_3086 SE0530121 hAT Hat3 scaffold_3 12020055 12020268
MITE_3087 SE0520122 Mutator M9 scaffold_5 5816918 5817492
MITE_3088 SE0550123 PIF/harbinger To9 scaffold_7 45589 45706