Capsella rubella, the pink shepherd's-purse, closely related to Arabidopsis thaliana in the Brassicaceae family, offers a valuable model for exploring the transition from self-incompatibility to self-compatibility in plant reproduction. Found primarily in the Mediterranean region, it diverged from its closest ancestor approximately 30,000 to 50,000 years ago, distinguishing itself from Capsella bursa-pastoris by its diploid genome.
MITE ID![]() |
MITE identifier![]() |
Superfamily![]() |
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Chr![]() |
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MITE_2966 | SE0550001 | PIF/harbinger | To1 | scaffold_8 | 6574358 | 6574781 | |
MITE_2967 | SE0520002 | Mutator | M1 | scaffold_2 | 6940373 | 6940920 | |
MITE_2968 | SE0510003 | Tc1/Mariner | St1 | scaffold_4 | 5331035 | 5331270 | |
MITE_2969 | SE0550004 | PIF/harbinger | To2 | scaffold_1 | 13001381 | 13001858 | |
MITE_2970 | SE0550005 | PIF/harbinger | To3 | scaffold_3 | 6464036 | 6464408 | |
MITE_2971 | SE0550006 | PIF/harbinger | To3 | scaffold_8 | 11028580 | 11028942 | |
MITE_2972 | SE0530007 | hAT | Hat1 | scaffold_4 | 2077460 | 2078068 | |
MITE_2973 | SE0550008 | PIF/harbinger | To4 | scaffold_5 | 11403343 | 11403509 | |
MITE_2974 | SE0520009 | Mutator | M2 | scaffold_5 | 4030981 | 4031423 | |
MITE_2975 | SE0530010 | hAT | Hat2 | scaffold_4 | 7471503 | 7472260 | |
MITE_2976 | SE0550011 | PIF/harbinger | To5 | scaffold_8 | 11199436 | 11199635 | |
MITE_2977 | SE0510012 | Tc1/Mariner | St2 | scaffold_4 | 3042476 | 3042728 | |
MITE_2978 | SE0550013 | PIF/harbinger | To6 | scaffold_7 | 7083342 | 7083459 | |
MITE_2979 | SE0510014 | Tc1/Mariner | St3 | scaffold_2 | 4444856 | 4445105 | |
MITE_2980 | SE0550015 | PIF/harbinger | To7 | scaffold_1 | 4842285 | 4842492 | |
MITE_2981 | SE0530016 | hAT | Hat3 | scaffold_6 | 1982305 | 1982517 | |
MITE_2982 | SE0550017 | PIF/harbinger | To8 | scaffold_5 | 8725399 | 8725537 | |
MITE_2983 | SE0520018 | Mutator | M3 | scaffold_2 | 8967103 | 8967615 | |
MITE_2984 | SE0550019 | PIF/harbinger | To9 | scaffold_7 | 45589 | 45706 | |
MITE_2985 | SE0550020 | PIF/harbinger | To10 | scaffold_5 | 2906899 | 2907037 | |
MITE_2986 | SE0550021 | PIF/harbinger | To11 | scaffold_6 | 16376312 | 16376429 | |
MITE_2987 | SE0520022 | Mutator | M4 | scaffold_4 | 12387317 | 12387863 | |
MITE_2988 | SE0520023 | Mutator | M5 | scaffold_1 | 12145964 | 12146519 | |
MITE_2989 | SE0550024 | PIF/harbinger | To12 | scaffold_5 | 9263674 | 9263811 | |
MITE_2990 | SE0550025 | PIF/harbinger | To13 | scaffold_2 | 2700660 | 2700857 | |
MITE_2991 | SE0530026 | hAT | Hat4 | scaffold_8 | 12567200 | 12567412 | |
MITE_2992 | SE0540027 | CACTA | Ca1 | scaffold_8 | 5926723 | 5926908 | |
MITE_2993 | SE0520028 | Mutator | M6 | scaffold_7 | 10752056 | 10752323 | |
MITE_2994 | SE0550029 | PIF/harbinger | To9 | scaffold_3 | 8748506 | 8748622 | |
MITE_2995 | SE0550030 | PIF/harbinger | To14 | scaffold_3 | 11780968 | 11781221 | |
MITE_2996 | SE0550031 | PIF/harbinger | To15 | scaffold_135 | 3931 | 4291 | |
MITE_2997 | SE0550032 | PIF/harbinger | To2 | scaffold_4 | 10619145 | 10619621 | |
MITE_2998 | SE0520033 | Mutator | M7 | scaffold_7 | 9195696 | 9196368 | |
MITE_2999 | SE0530034 | hAT | Hat4 | scaffold_8 | 12567200 | 12567412 | |
MITE_3000 | SE0530035 | hAT | Hat5 | scaffold_8 | 8559252 | 8559474 | |
MITE_3001 | SE0550036 | PIF/harbinger | To16 | scaffold_1 | 9754254 | 9754621 | |
MITE_3002 | SE0520037 | Mutator | M8 | scaffold_2 | 7604132 | 7604762 | |
MITE_3003 | SE0550038 | PIF/harbinger | To17 | scaffold_8 | 4275235 | 4275587 | |
MITE_3004 | SE0510039 | Tc1/Mariner | St3 | scaffold_6 | 12724111 | 12724354 | |
MITE_3005 | SE0550040 | PIF/harbinger | To18 | scaffold_2 | 3502485 | 3502624 | |
MITE_3006 | SE0550041 | PIF/harbinger | To19 | scaffold_2 | 2045040 | 2045294 | |
MITE_3007 | SE0550042 | PIF/harbinger | To5 | scaffold_3 | 935677 | 935876 | |
MITE_3008 | SE0530043 | hAT | Hat6 | scaffold_6 | 9566987 | 9567544 | |
MITE_3009 | SE0550044 | PIF/harbinger | To4 | scaffold_3 | 5049248 | 5049414 | |
MITE_3010 | SE0550045 | PIF/harbinger | To15 | scaffold_4 | 12377065 | 12377425 | |
MITE_3011 | SE0550046 | PIF/harbinger | To2 | scaffold_4 | 10619145 | 10619621 | |
MITE_3012 | SE0550047 | PIF/harbinger | To7 | scaffold_1 | 4842285 | 4842492 | |
MITE_3013 | SE0550048 | PIF/harbinger | To8 | scaffold_1 | 11827486 | 11827623 | |
MITE_3014 | SE0550049 | PIF/harbinger | To20 | scaffold_3 | 5986171 | 5986391 | |
MITE_3015 | SE0550050 | PIF/harbinger | To10 | scaffold_5 | 12072985 | 12073123 | |
MITE_3016 | SE0550051 | PIF/harbinger | To18 | scaffold_7 | 9520557 | 9520696 | |
MITE_3017 | SE0530052 | hAT | Hat7 | scaffold_2 | 10181419 | 10182144 | |
MITE_3018 | SE0530053 | hAT | Hat8 | scaffold_4 | 7907026 | 7907730 | |
MITE_3019 | SE0550054 | PIF/harbinger | To17 | scaffold_4 | 2679286 | 2679636 | |
MITE_3020 | SE0530055 | hAT | Hat2 | scaffold_6 | 15772261 | 15773053 | |
MITE_3021 | SE0520056 | Mutator | M5 | scaffold_3 | 10985670 | 10986224 | |
MITE_3022 | SE0520057 | Mutator | M9 | scaffold_3 | 10939914 | 10940484 | |
MITE_3023 | SE0550058 | PIF/harbinger | To21 | scaffold_7 | 13978459 | 13979182 | |
MITE_3024 | SE0530059 | hAT | Hat9 | scaffold_7 | 16866915 | 16867128 | |
MITE_3025 | SE0550060 | PIF/harbinger | To12 | scaffold_2 | 11559975 | 11560112 | |
MITE_3026 | SE0550061 | PIF/harbinger | To5 | scaffold_1 | 16255748 | 16255947 | |
MITE_3027 | SE0550062 | PIF/harbinger | To22 | scaffold_6 | 14888032 | 14888581 | |
MITE_3028 | SE0550063 | PIF/harbinger | To13 | scaffold_2 | 6854700 | 6854866 | |
MITE_3029 | SE0550064 | PIF/harbinger | To23 | scaffold_7 | 4557181 | 4557915 | |
MITE_3030 | SE0530065 | hAT | Hat10 | scaffold_2 | 2002166 | 2002836 | |
MITE_3031 | SE0520066 | Mutator | M9 | scaffold_2 | 4823942 | 4824502 | |
MITE_3032 | SE0550067 | PIF/harbinger | To13 | scaffold_7 | 514212 | 514388 | |
MITE_3033 | SE0550068 | PIF/harbinger | To24 | scaffold_2 | 12865116 | 12865453 | |
MITE_3034 | SE0550069 | PIF/harbinger | To25 | scaffold_2 | 12582840 | 12583250 | |
MITE_3035 | SE0530070 | hAT | Hat11 | scaffold_2 | 13537090 | 13537282 | |
MITE_3036 | SE0550071 | PIF/harbinger | To27 | scaffold_6 | 6981198 | 6981397 | |
MITE_3037 | SE0530072 | hAT | Hat3 | scaffold_4 | 1705489 | 1705702 | |
MITE_3038 | SE0520073 | Mutator | M8 | scaffold_1 | 13678197 | 13678828 | |
MITE_3039 | SE0540074 | CACTA | Ca1 | scaffold_1 | 15238577 | 15238751 | |
MITE_3040 | SE0520075 | Mutator | M4 | scaffold_4 | 265639 | 266186 | |
MITE_3041 | SE0520076 | Mutator | M8 | scaffold_7 | 6274476 | 6275104 | |
MITE_3042 | SE0550077 | PIF/harbinger | To3 | scaffold_4 | 4585905 | 4586266 | |
MITE_3043 | SE0530078 | hAT | Hat3 | scaffold_3 | 12020055 | 12020268 | |
MITE_3044 | SE0520079 | Mutator | M2 | scaffold_5 | 4303487 | 4303931 | |
MITE_3045 | SE0520080 | Mutator | M3 | scaffold_6 | 10409761 | 10410276 | |
MITE_3046 | SE0510081 | Tc1/Mariner | St2 | scaffold_4 | 3042476 | 3042728 | |
MITE_3047 | SE0550082 | PIF/harbinger | To3 | scaffold_6 | 11516308 | 11516680 | |
MITE_3048 | SE0520083 | Mutator | M6 | scaffold_7 | 10752056 | 10752324 | |
MITE_3049 | SE0550084 | PIF/harbinger | To10 | scaffold_5 | 2906899 | 2907037 | |
MITE_3050 | SE0510085 | Tc1/Mariner | St2 | scaffold_3 | 10147660 | 10147913 | |
MITE_3051 | SE0510086 | Tc1/Mariner | St2 | scaffold_8 | 5626099 | 5626349 | |
MITE_3052 | SE0530087 | hAT | Hat4 | scaffold_3 | 12657951 | 12658164 | |
MITE_3053 | SE0510088 | Tc1/Mariner | St2 | scaffold_4 | 3055425 | 3055677 | |
MITE_3054 | SE0550089 | PIF/harbinger | To1 | scaffold_7 | 11224576 | 11224999 | |
MITE_3055 | SE0550090 | PIF/harbinger | To28 | scaffold_4 | 6275245 | 6275977 | |
MITE_3056 | SE0550091 | PIF/harbinger | To1 | scaffold_7 | 12205192 | 12205615 | |
MITE_3057 | SE0550092 | PIF/harbinger | To29 | scaffold_1 | 17067746 | 17068094 | |
MITE_3058 | SE0550093 | PIF/harbinger | To7 | scaffold_4 | 959648 | 959857 | |
MITE_3059 | SE0520094 | Mutator | M10 | scaffold_1 | 12039311 | 12039683 | |
MITE_3060 | SE0550095 | PIF/harbinger | To8 | scaffold_5 | 8725399 | 8725537 | |
MITE_3061 | SE0550096 | PIF/harbinger | To4 | scaffold_5 | 11403343 | 11403509 | |
MITE_3062 | SE0550097 | PIF/harbinger | To12 | scaffold_2 | 11559975 | 11560112 | |
MITE_3063 | SE0550098 | PIF/harbinger | To10 | scaffold_5 | 12072985 | 12073123 | |
MITE_3064 | SE0530099 | hAT | Hat1 | scaffold_14 | 92210 | 92824 | |
MITE_3065 | SE0550100 | PIF/harbinger | To30 | scaffold_7 | 1117850 | 1118069 | |
MITE_3066 | SE0520101 | Mutator | M1 | scaffold_6 | 14147556 | 14148102 | |
MITE_3067 | SE0520102 | Mutator | M9 | scaffold_3 | 10939914 | 10940484 | |
MITE_3068 | SE0520103 | Mutator | M6 | scaffold_7 | 10752056 | 10752324 | |
MITE_3069 | SE0550104 | PIF/harbinger | To14 | scaffold_3 | 11780968 | 11781221 | |
MITE_3070 | SE0530105 | hAT | Hat9 | scaffold_5 | 3056814 | 3057026 | |
MITE_3071 | SE0550106 | PIF/harbinger | To10 | scaffold_5 | 12072985 | 12073123 | |
MITE_3072 | SE0550107 | PIF/harbinger | To4 | scaffold_3 | 5049248 | 5049478 | |
MITE_3073 | SE0550108 | PIF/harbinger | To16 | scaffold_1 | 9754254 | 9754621 | |
MITE_3074 | SE0550109 | PIF/harbinger | To31 | scaffold_5 | 9971774 | 9972062 | |
MITE_3075 | SE0540110 | CACTA | Ca1 | scaffold_2 | 3912971 | 3913145 | |
MITE_3076 | SE0520111 | Mutator | M10 | scaffold_8 | 1624929 | 1625303 | |
MITE_3077 | SE0550112 | PIF/harbinger | To3 | scaffold_5 | 2170855 | 2171217 | |
MITE_3078 | SE0550113 | PIF/harbinger | To8 | scaffold_5 | 8725399 | 8725537 | |
MITE_3079 | SE0530114 | hAT | Hat12 | scaffold_7 | 10338379 | 10339076 | |
MITE_3080 | SE0550115 | PIF/harbinger | To32 | scaffold_8 | 1784210 | 1784375 | |
MITE_3081 | SE0550116 | PIF/harbinger | To33 | scaffold_7 | 12249434 | 12249777 | |
MITE_3082 | SE0550117 | PIF/harbinger | To34 | scaffold_5 | 239537 | 239674 | |
MITE_3083 | SE0550118 | PIF/harbinger | To18 | scaffold_8 | 12414247 | 12414386 | |
MITE_3084 | SE0550119 | PIF/harbinger | To35 | scaffold_227 | 2171 | 2493 | |
MITE_3085 | SE0510120 | Tc1/Mariner | St3 | scaffold_8 | 3408647 | 3408896 | |
MITE_3086 | SE0530121 | hAT | Hat3 | scaffold_3 | 12020055 | 12020268 | |
MITE_3087 | SE0520122 | Mutator | M9 | scaffold_5 | 5816918 | 5817492 | |
MITE_3088 | SE0550123 | PIF/harbinger | To9 | scaffold_7 | 45589 | 45706 |